2025 · BIOPHYSICAL CHEMISTRY

Effect of pyrimethanil on aβ42 aggregation mechanisms revealed at single entity level and molecular dynamic simulations

Meyer, Nathan, Arroyo, Nicolas, Roustan, Lois, Janot, Jean-Marc, Perrier, Veronique, Torrent, Joan, Picaud, Fabien, Balme, Sebastien

Journal
BIOPHYSICAL CHEMISTRY
Année
2025
Volume
325
Article
107471
Mois
OCT
DOI
10.1016/j.bpc.2025.107471

Abstract

This study investigated the impact of pyrimethanil, a fungicide, on the aggregation of amyloid-beta 42 (a beta 42) peptides in vitro. The findings demonstrated that pyrimethanil accelerated a beta 42 aggregation kinetics, as evidenced by thioflavin T (ThT) fluorescence assays in both tube and microplate experiments. A combination of single molecule techniques and molecular dynamics simulations is used to elucidate the complex effects of pyrimethanil on a beta 42 aggregation mechanism. Nanopore experiments indicated that pyrimethanil promoted the formation of small oligomers (6-13.5 nm) during the lag phase, which were not detected under control conditions. Confocal fluorescence spectroscopy revealed that pyrimethanil induced the formation of larger beta-sheet structured aggregates. In the presence of preformed seeds, pyrimethanil exhibited a dual role by fragmenting existing fibrils into smaller species and enhancing aggregation, likely through combined effects with the newly formed smaller seeds. Molecular dynamics simulations confirmed that pyrimethanil has a higher affinity for fibrils than monomers and weakens monomer-fibril interactions. Overall, this study elucidates the complex effects of pyrimethanil on a beta 42 aggregation, involving promotion of primary nucleation, fibril fragmentation, and modulation of monomer-fibril interactions. These findings provide important mechanistic insights into how environmental factors like pesticides may influence amyloid aggregation processes relevant to Alzheimer's disease.

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